Genome Wide Characterization, Comparative and Genetic Diversity Analysis of Simple Sequence Repeats in Cucurbita Species

نویسندگان

چکیده

Simple sequence repeats (SSRs) are widely used in mapping constructions and comparative genetic diversity analyses. Here, 103,056 SSR loci were found Cucurbita species by silico PCR. In general, the frequency of these SSRs decreased with increase motif length, di-nucleotide motifs most common type. For same repeat types, sharply number. The majority suitable for marker development (84.75% moschata, 94.53% maxima, 95.09% pepo). Using markers, cross-species transferable markers between C. pepo other Cucurbitaceae developed, complicated mosaic relationships among them analyzed. Especially, main syntenic moschata or maxima indicated that chromosomes genomes highly conserved during evolution. Furthermore, 66 core selected to measure 61 germplasms, they divided into two groups structure unweighted pair group method arithmetic analysis. These results will promote utilization basic applied research species.

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Genetic Diversity Analysis of Maize Hybrids Through Morphological Traits and Simple Sequence Repeat Markers

Comparing different methods of estimating the genetic diversity could define their usefulness in plant breeding programs. In this study, a total of 18 morphological traits and 20 simple sequence repeat (SSR) loci were used to study the morphological and genetic diversity among 20 maize hybrids selected from different countries, and to classify the hybrids into groups based on molecular profiles...

متن کامل

Genetic Diversity of Marrubium Species from Zagros Region (Iran), Using Inter Simple Sequence Repeat Molecular Marker

This study concerns the genetic diversity and taxonomic status of Marrubium species from central and south-west of Zagros region, Iran. It is investigated by Inter-Simple Sequence Repeat analysis. A total of 68 accessions from five Marrubium species were collected from their natural habitats. Molecular analysis was approved with 17 primers, of which 12 were carried out in the reaction mixture. ...

متن کامل

phylogeography and genetic diversity of the lesser mouse- eared bat (myotis blythii) in iran

in current study, 63 samples of bat populations collected from differ regions were used for evaluating the geographic variations. twenty cranial and dental characters for traditional morphometric and landmarks method on the ventral, dorsal skull and mandible for geometry morphometric studies were used. statistical analyses of traditional morphometric and geometry morphometric data indicated low...

Genetic Diversity Cucumber Using Inter Simple Sequence Repeats (ISSR)

Cucumber is an important vegetable crop grown worldwide. Genetic diversity and similarity among 11 cucumber genotypes viz. PCUCP-2, PCUCP-3, Nun-3139, Nun-3121, Nun-3141, Infinity, Isatis and Kian and PCUC-8, PCUC15 and PCUC-28 were grown under greenhouse conditions in G. B. Pant University of Agriculture and Technology, Pantnagar. Fresh and young leaves were collected from each genotype. The l...

متن کامل

Evolution Analysis of Simple Sequence Repeats in Plant Genome

Simple sequence repeats (SSRs) are widespread units on genome sequences, and play many important roles in plants. In order to reveal the evolution of plant genomes, we investigated the evolutionary regularities of SSRs during the evolution of plant species and the plant kingdom by analysis of twelve sequenced plant genome sequences. First, in the twelve studied plant genomes, the main SSRs were...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

ژورنال

عنوان ژورنال: Horticulturae

سال: 2021

ISSN: ['2311-7524']

DOI: https://doi.org/10.3390/horticulturae7060143